Cis-meQTLs across different cancer types
In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
Methylation probe
|
Methylation position (hg19)
|
Gene symbol
|
P-valule
|
||||
---|---|---|---|---|---|---|---|---|---|---|---|
BLCA | rs10090406 | chr8:91691270 | G/A | cg16814680 | chr8:91681699 | NA | -1.15 | -32.84 | -0.86 | 5.0E-113 | Box Plot |
BLCA | rs10091274 | chr8:91691313 | C/G | cg16814680 | chr8:91681699 | NA | -1.15 | -32.84 | -0.86 | 5.0E-113 | Box Plot |
BLCA | rs1045252 | chr1:227181555 | A/G | cg10327440 | chr1:227177885 | CDC42BPA | -1.14 | -31.88 | -0.85 | 1.93E-109 | Box Plot |
BLCA | rs1045285 | chr1:227179054 | G/A | cg10327440 | chr1:227177885 | CDC42BPA | -1.15 | -32 | -0.85 | 6.82E-110 | Box Plot |
BLCA | rs1045286 | chr1:227179037 | A/C | cg10327440 | chr1:227177885 | CDC42BPA | 1.11 | 29.97 | 0.84 | 3.81E-102 | Box Plot |
BLCA | rs1045287 | chr1:227178962 | C/T | cg10327440 | chr1:227177885 | CDC42BPA | 1.11 | 30.72 | 0.84 | 5.11E-105 | Box Plot |
BLCA | rs1045289 | chr1:227178713 | C/T | cg10327440 | chr1:227177885 | CDC42BPA | -1.15 | -32.68 | -0.86 | 2.03E-112 | Box Plot |
BLCA | rs1045290 | chr1:227178700 | A/G | cg10327440 | chr1:227177885 | CDC42BPA | -1.15 | -32.68 | -0.86 | 2.03E-112 | Box Plot |
BLCA | rs10495273 | chr1:227183359 | T/G | cg10327440 | chr1:227177885 | CDC42BPA | -1.14 | -31.65 | -0.85 | 1.45E-108 | Box Plot |
BLCA | rs10584341 | chr1:227198434 | AGAG/A | cg10327440 | chr1:227177885 | CDC42BPA | -1.13 | -31.68 | -0.85 | 1.07E-108 | Box Plot |
BLCA | rs1062908 | chr1:227181554 | C/G | cg10327440 | chr1:227177885 | CDC42BPA | -1.14 | -31.96 | -0.85 | 1.01E-109 | Box Plot |
BLCA | rs10808624 | chr8:91693781 | G/C | cg16814680 | chr8:91681699 | NA | -1.14 | -31.27 | -0.85 | 3.92E-107 | Box Plot |
BLCA | rs10808625 | chr8:91693934 | A/G | cg16814680 | chr8:91681699 | NA | 1.1 | 31.22 | 0.85 | 6.24E-107 | Box Plot |
BLCA | rs10808626 | chr8:91693987 | A/G | cg16814680 | chr8:91681699 | NA | -1.14 | -31.28 | -0.85 | 3.71E-107 | Box Plot |
BLCA | rs10916075 | chr1:227184074 | G/A | cg10327440 | chr1:227177885 | CDC42BPA | -1.14 | -31.72 | -0.85 | 7.63E-109 | Box Plot |