Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs10090406 chr8:91691270 G/A cg16814680 chr8:91681699 NA -1.15 -32.84 -0.86 5.0E-113 Box Plot
BLCA rs10091274 chr8:91691313 C/G cg16814680 chr8:91681699 NA -1.15 -32.84 -0.86 5.0E-113 Box Plot
BLCA rs1045252 chr1:227181555 A/G cg10327440 chr1:227177885 CDC42BPA -1.14 -31.88 -0.85 1.93E-109 Box Plot
BLCA rs1045285 chr1:227179054 G/A cg10327440 chr1:227177885 CDC42BPA -1.15 -32 -0.85 6.82E-110 Box Plot
BLCA rs1045286 chr1:227179037 A/C cg10327440 chr1:227177885 CDC42BPA 1.11 29.97 0.84 3.81E-102 Box Plot
BLCA rs1045287 chr1:227178962 C/T cg10327440 chr1:227177885 CDC42BPA 1.11 30.72 0.84 5.11E-105 Box Plot
BLCA rs1045289 chr1:227178713 C/T cg10327440 chr1:227177885 CDC42BPA -1.15 -32.68 -0.86 2.03E-112 Box Plot
BLCA rs1045290 chr1:227178700 A/G cg10327440 chr1:227177885 CDC42BPA -1.15 -32.68 -0.86 2.03E-112 Box Plot
BLCA rs10495273 chr1:227183359 T/G cg10327440 chr1:227177885 CDC42BPA -1.14 -31.65 -0.85 1.45E-108 Box Plot
BLCA rs10584341 chr1:227198434 AGAG/A cg10327440 chr1:227177885 CDC42BPA -1.13 -31.68 -0.85 1.07E-108 Box Plot
BLCA rs1062908 chr1:227181554 C/G cg10327440 chr1:227177885 CDC42BPA -1.14 -31.96 -0.85 1.01E-109 Box Plot
BLCA rs10808624 chr8:91693781 G/C cg16814680 chr8:91681699 NA -1.14 -31.27 -0.85 3.92E-107 Box Plot
BLCA rs10808625 chr8:91693934 A/G cg16814680 chr8:91681699 NA 1.1 31.22 0.85 6.24E-107 Box Plot
BLCA rs10808626 chr8:91693987 A/G cg16814680 chr8:91681699 NA -1.14 -31.28 -0.85 3.71E-107 Box Plot
BLCA rs10916075 chr1:227184074 G/A cg10327440 chr1:227177885 CDC42BPA -1.14 -31.72 -0.85 7.63E-109 Box Plot